• Publications

Publications

Slanina H, Madhugiri R, Bylapudi G, Schultheiss K, Karl N, Gulyaeva A, Gorbalenya AE, Linne U, Ziebuhr J. 2021.
Coronavirus replication-transcription complex: Vital and selective NMPylation of a conserved site in nsp9 by the NiRAN-RdRp subunit.
Proc Natl Acad Sci U S A 118.

Pfefferkorn M, Schott T, Bohm S, Deichsel D, Felkel C, Gerlich WH, Glebe D, Wat C, Pavlovic V, Heyne R, Berg T, van Bommel F. 2021.
Composition of HBsAg is predictive of HBsAg loss during treatment in patients with HBeAg-positive chronic hepatitis B.
J Hepatol 74:283-292.

Muller C, Obermann W, Karl N, Wendel HG, Taroncher-Oldenburg G, Pleschka S, Hartmann RK, Grunweller A, Ziebuhr J. 2021.
The rocaglate CR-31-B (-) inhibits SARS-CoV-2 replication at non-cytotoxic, low nanomolar concentrations in vitro and ex vivo.
Antiviral Res 186:105012.

Melior H, Li S, Stotzel M, Maass S, Schutz R, Azarderakhsh S, Shevkoplias A, Barth-Weber S, Baumgardt K, Ziebuhr J, Forstner KU, Chervontseva Z, Becher D, Evguenieva-Hackenberg E. 2021.
Reprograming of sRNA target specificity by the leader peptide peTrpL in response to antibiotic exposure.
Nucleic Acids Res doi:10.1093/nar/gkab093.

Lowjaga K, Kirstgen M, Muller SF, Goldmann N, Lehmann F, Glebe D, Geyer J. 2021.
Long-term trans-inhibition of the hepatitis B and D virus receptor NTCP by taurolithocholic acid.
Am J Physiol Gastrointest Liver Physiol 320:G66-G80.

Krichel B, Bylapudi G, Schmidt C, Blanchet C, Schubert R, Brings L, Koehler M, Zenobi R, Svergun D, Lorenzen K, Madhugiri R, Ziebuhr J, Uetrecht C. 2021.
Hallmarks of Alpha – and Betacoronavirus non-structural protein 7+8 complexes.
Sci Adv 7.

Hoek A, Maibach K, Ozmen E, Vazquez-Armendariz AI, Mengel JP, Hain T, Herold S, Goesmann A. 2021.
WASP: a versatile, web-accessible single cell RNA-Seq processing platform.
BMC Genomics 22:195.

Carrau T, Lamp B, Reuscher CM, Vilcinsksas A, Lee KZ. 2021.
Organization of the Structural Protein Region of La Jolla Virus Isolated from the Invasive Pest Insect Drosophila suzukii.
Viruses 13.

Ziv O, Price J, Shalamova L, Kamenova T, Goodfellow I, Weber F, Miska EA. 2020.
The Short- and Long-Range RNA-RNA Interactome of SARS-CoV-2.
Mol Cell 80:1067-1077 e5.

Zarnack K, Balasubramanian S, Gantier MP, Kunetsky V, Kracht M, Schmitz ML, Strasser K. 2020.
Dynamic mRNP Remodeling in Response to Internal and External Stimuli.
Biomolecules 10.

Wuerth JD, Habjan M, Kainulainen M, Berisha B, Bertheloot D, Superti-Furga G, Pichlmair A, Weber F. 2020.
eIF2B as a Target for Viral Evasion of PKR-Mediated Translation Inhibition.
mBio 11.

Weiterer SS, Meier-Soelch J, Georgomanolis T, Mizi A, Beyerlein A, Weiser H, Brant L, Mayr-Buro C, Jurida L, Beuerlein K, Muller H, Weber A, Tenekeci U, Dittrich-Breiholz O, Bartkuhn M, Nist A, Stiewe T, van IWF, Riedlinger T, Schmitz ML, Papantonis A, Kracht M. 2020.
Distinct IL-1alpha-responsive enhancers promote acute and coordinated changes in chromatin topology in a hierarchical manner.
EMBO J 39:e101533.

Vazquez-Armendariz AI, Heiner M, El Agha E, Salwig I, Hoek A, Hessler MC, Shalashova I, Shrestha A, Carraro G, Mengel JP, Gunther A, Morty RE, Vadasz I, Schwemmle M, Kummer W, Hain T, Goesmann A, Bellusci S, Seeger W, Braun T, Herold S. 2020.
Multilineage murine stem cells generate complex organoids to model distal lung development and disease.
EMBO J 39:e103476.

Ulyanova V, Shah Mahmud R, Laikov A, Dudkina E, Markelova M, Mostafa A, Pleschka S, Ilinskaya O. 2020.
Anti-Influenza Activity of the Ribonuclease Binase: Cellular Targets Detected by Quantitative Proteomics.
Int J Mol Sci 21.

Thom R, Tipton T, Strecker T, Hall Y, Akoi Bore J, Maes P, Raymond Koundouno F, Fehling SK, Krahling V, Steeds K, Varghese A, Bailey G, Matheson M, Cone M, Moussa Keita B, Kouyate S, Richard Ablam A, Laenen L, Vergote V, Guiver M, Timothy J, Atkinson B, Ottowell L, Richards KS, Bosworth A, Longet S, Mellors J, Pannetier D, Duraffour S, Munoz-Fontela C, Sow O, Koivogui L, Newman E, Becker S, Sprecher A, Raoul H, Hiscox J, Henao-Restrepo AM, Sakoba K, Magassouba N, Gunther S, Kader Konde M, Carroll MW. 2020.
Longitudinal antibody and T cell responses in Ebola virus disease survivors and contacts: an observational cohort study.
Lancet Infect Dis doi:10.1016/S1473-3099(20)30736-2.

Tekes G, Ehmann R, Boulant S, Stanifer ML. 2020.
Development of Feline Ileum- and Colon-Derived Organoids and Their Potential Use to Support Feline Coronavirus Infection.
Cells 9.

Takamatsu Y, Krahling V, Kolesnikova L, Halwe S, Lier C, Baumeister S, Noda T, Biedenkopf N, Becker S. 2020.
Serine-Arginine Protein Kinase 1 Regulates Ebola Virus Transcription.
mBio 11.

Takamatsu Y, Kolesnikova L, Schauflinger M, Noda T, Becker S. 2020.
The Integrity of the YxxL Motif of Ebola Virus VP24 Is Important for the Transport of Nucleocapsid-Like Structures and for the Regulation of Viral RNA Synthesis.
J Virol 94.

Taka S, Nikopoulou C, Polyzos A, Megremis S, Skevaki CL, Roumpedaki E, Trochoutsou A, Thanos D, Papadopoulos NG. 2020.
Effects of cryopreservation on antiviral responses of primary airway epithelial cells.
Allergy 75:1486-1489.

Stott RJ, Strecker T, Foster TL. 2020.
Distinct Molecular Mechanisms of Host Immune Response Modulation by Arenavirus NP and Z Proteins.
Viruses 12.

Steeds K, Hall Y, Slack GS, Longet S, Strecker T, Fehling SK, Wright E, Bore JA, Koundouno FR, Konde MK, Hewson R, Hiscox JA, Pollakis G, Carroll MW. 2020.
Pseudotyping of VSV with Ebola virus glycoprotein is superior to HIV-1 for the assessment of neutralising antibodies.
Sci Rep 10:14289.

Skevaki C, Weckmann M. 2020.
Activation of Group 2 Innate Lymphoid Cells via TL1A/DR3: A Solution to Corticosteroid Resistance?
Am J Respir Crit Care Med doi:10.1164/rccm.202007-2658ED.

Skevaki C, Karsonova A, Karaulov A, Xie M, Renz H. 2020.
Asthma-associated risk for COVID-19 development.
J Allergy Clin Immunol doi:10.1016/j.jaci.2020.09.017.

Skevaki C, Fragkou PC, Cheng C, Xie M, Renz H. 2020.
Laboratory characteristics of patients infected with the novel SARS-CoV-2 virus.
J Infect 81:205-212.

Siering O, Sawatsky B, Pfaller CK. 2020.
C Protein is Essential for Canine Distemper Virus Virulence and Pathogenicity in Ferrets.
J Virol doi:10.1128/JVI.01840-20.

Schwengers O, Hoek A, Fritzenwanker M, Falgenhauer L, Hain T, Chakraborty T, Goesmann A. 2020.
ASA3P: An automatic and scalable pipeline for the assembly, annotation and higher-level analysis of closely related bacterial isolates.
PLoS Comput Biol 16:e1007134.

Schwengers O, Hain T, Chakraborty T, Goesmann A. 2020.
ReferenceSeeker: rapid determination of appropriate reference genomes.
Journal of Open Source Software 5:1994.

Schoen A, Lau S, Verbruggen P, Weber F. 2020.
Elongin C Contributes to RNA Polymerase II Degradation by the Interferon Antagonist NSs of La Crosse Orthobunyavirus.
J Virol 94.

Schloer S, Goretzko J, Pleschka S, Ludwig S, Rescher U. 2020.
Combinatory Treatment with Oseltamivir and Itraconazole Targeting Both Virus and Host Factors in Influenza A Virus Infection.
Viruses 12.

Sauerhering L, Kupke A, Meier L, Dietzel E, Hoppe J, Gruber AD, Gattenloehner S, Witte B, Fink L, Hofmann N, Zimmermann T, Goesmann A, Nist A, Stiewe T, Becker S, Herold S, Peteranderl C. 2020.
Cyclophilin inhibitors restrict Middle East respiratory syndrome coronavirus via interferon-lambda in vitro and in mice.
Eur Respir J 56.

Ringel M, Behner L, Heiner A, Sauerhering L, Maisner A. 2020.
Replication of a Nipah Virus Encoding a Nuclear-Retained Matrix Protein.
J Infect Dis 221:S389-S394.

Renz H, Skevaki C. 2020.
Early life microbial exposures and allergy risks: opportunities for prevention.
Nat Rev Immunol doi:10.1038/s41577-020-00420-y.

Paraskevopoulou S, Pirzer F, Goldmann N, Schmid J, Corman VM, Gottula LT, Schroeder S, Rasche A, Muth D, Drexler JF, Heni AC, Eibner GJ, Page RA, Jones TC, Muller MA, Sommer S, Glebe D, Drosten C. 2020.
Mammalian deltavirus without hepadnavirus coinfection in the neotropical rodent Proechimys semispinosus.
Proc Natl Acad Sci U S A 117:17977-17983.

Olayemi A, Adesina AS, Strecker T, Magassouba N, Fichet-Calvet E. 2020.
Determining Ancestry between Rodent- and Human-Derived Virus Sequences in Endemic Foci: Towards a More Integral Molecular Epidemiology of Lassa Fever within West Africa.
Biology (Basel) 9.

Niepmann M, Gerresheim GK. 2020.
Hepatitis C Virus Translation Regulation.
Int J Mol Sci 21.

Nelson PP, Rath BA, Fragkou PC, Antalis E, Tsiodras S, Skevaki C. 2020.
Current and Future Point-of-Care Tests for Emerging and New Respiratory Viruses and Future Perspectives.
Front Cell Infect Microbiol 10:181.

Muller H, Fehling SK, Dorna J, Urbanowicz RA, Oestereich L, Krebs Y, Kolesnikova L, Schauflinger M, Krahling V, Magassouba N, Fichet-Calvet E, Ball JK, Kaufmann A, Bauer S, Becker S, von Messling V, Strecker T. 2020.
Adjuvant formulated virus-like particles expressing native-like forms of the Lassa virus envelope surface glycoprotein are immunogenic and induce antibodies with broadly neutralizing activity.
NPJ Vaccines 5:71.

Muller C, Obermann W, Schulte FW, Lange-Grunweller K, Oestereich L, Elgner F, Glitscher M, Hildt E, Singh K, Wendel HG, Hartmann RK, Ziebuhr J, Grunweller A. 2020.
Comparison of broad-spectrum antiviral activities of the synthetic rocaglate CR-31-B (-) and the eIF4A-inhibitor Silvestrol.
Antiviral Res 175:104706.

Mostajo NF, Lataretu M, Krautwurst S, Mock F, Desiro D, Lamkiewicz K, Collatz M, Schoen A, Weber F, Marz M, Holzer M. 2020.
A comprehensive annotation and differential expression analysis of short and long non-coding RNAs in 16 bat genomes.
NAR Genom Bioinform 2:lqz006.

Mostafa A, Mahmoud SH, Shehata M, Muller C, Kandeil A, El-Shesheny R, Nooh HZ, Kayali G, Ali MA, Pleschka S. 2020.
PA from a Recent H9N2 (G1-Like) Avian Influenza a Virus (AIV) Strain Carrying Lysine 367 Confers Altered Replication Efficiency and Pathogenicity to Contemporaneous H5N1 in Mammalian Systems.
Viruses 12.

Morty RE, Ziebuhr J. 2020.
Call for Papers: The Pathophysiology of COVID-19 and SARS-CoV-2 Infection.
Am J Physiol Lung Cell Mol Physiol 318:L1016-L1019.

Laure M, Hamza H, Koch-Heier J, Quernheim M, Muller C, Schreiber A, Muller G, Pleschka S, Ludwig S, Planz O. 2020.
Antiviral efficacy against influenza virus and pharmacokinetic analysis of a novel MEK-inhibitor, ATR-002, in cell culture and in the mouse model.
Antiviral Res 178:104806.

Lau S, Weber F. 2020.
Nuclear pore protein Nup98 is involved in replication of Rift Valley fever virus and nuclear import of virulence factor NSs.
J Gen Virol 101:712-716.

Kracht M, Muller-Ladner U, Schmitz ML. 2020.
Mutual regulation of metabolic processes and proinflammatory NF-kappaB signaling.
J Allergy Clin Immunol doi:10.1016/j.jaci.2020.07.027.

Kirstgen M, Lowjaga K, Muller SF, Goldmann N, Lehmann F, Alakurtti S, Yli-Kauhaluoma J, Glebe D, Geyer J. 2020.
Selective hepatitis B and D virus entry inhibitors from the group of pentacyclic lupane-type betulin-derived triterpenoids.
Sci Rep 10:21772.

Jensen O, Ansari S, Gebauer L, Muller SF, Lowjaga K, Geyer J, Tzvetkov MV, Brockmoller J. 2020.
A double-Flp-in method for stable overexpression of two genes.
Sci Rep 10:14018.

Harbig A, Mernberger M, Bittel L, Pleschka S, Schughart K, Steinmetzer T, Stiewe T, Nist A, Bottcher-Friebertshauser E. 2020.
Transcriptome profiling and protease inhibition experiments identify proteases that activate H3N2 influenza A and influenza B viruses in murine airways.
J Biol Chem 295:11388-11407.

Haas J, Bloesel D, Bacher S, Kracht M, Schmitz ML. 2020.
Chromatin Targeting of HIPK2 Leads to Acetylation-Dependent Chromatin Decondensation.
Front Cell Dev Biol 8:852.

Groeger S, Denter F, Lochnit G, Schmitz ML, Meyle J. 2020.
Porphyromonas gingivalis Cell Wall Components Induce Programmed Death Ligand 1 (PD-L1) Expression on Human Oral Carcinoma Cells by a Receptor-Interacting Protein Kinase 2 (RIP2)-Dependent Mechanism.
Infect Immun 88.

Grikscheit K, Dolnik O, Takamatsu Y, Pereira AR, Becker S. 2020.
Ebola Virus Nucleocapsid-Like Structures Utilize Arp2/3 Signaling for Intracellular Long-Distance Transport.
Cells 9.

Gorbalenya AE, Baker SC, Baric RS, de Groot RJ, Drosten C, Gulyaeva AA, Haagmans BL, Lauber C, Leontovich AM, Neuman BW, Penzar D, Poon LLM, Samborskiy DV, Sidorov IA, Sola I, Ziebuhr J. 2020.
The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2.
Nat Microbiol 5:536-544.

Glebe D, Goldmann N, Lauber C, Seitz S. 2020.
HBV evolution and genetic variability: Impact on prevention, treatment and development of antivirals.
Antiviral Res 186:104973.

Gischke M, Ulrich R, O IF, Scheibner D, Salaheldin AH, Crossley B, Bottcher-Friebertshauser E, Veits J, Mettenleiter TC, Abdelwhab EM. 2020.
Insertion of Basic Amino Acids in the Hemagglutinin Cleavage Site of H4N2 Avian Influenza Virus (AIV)-Reduced Virus Fitness in Chickens is Restored by Reassortment with Highly Pathogenic H5N1 AIV.
Int J Mol Sci 21.

Gerresheim GK, Hess CS, Shalamova LA, Fricke M, Marz M, Andreev DE, Shatsky IN, Niepmann M. 2020.
Ribosome Pausing at Inefficient Codons at the End of the Replicase Coding Region Is Important for Hepatitis C Virus Genome Replication.
Int J Mol Sci 21.

Fragkou PC, Belhadi D, Peiffer-Smadja N, Moschopoulos CD, Lescure FX, Janocha H, Karofylakis E, Yazdanpanah Y, Mentre F, Skevaki C, Laouenan C, Tsiodras S, Viruses ESGfR. 2020.
Review of trials currently testing treatment and prevention of COVID-19.
Clin Microbiol Infect 26:988-998.

Fischer K, Suluku R, Fehling SK, Jabaty J, Koroma B, Strecker T, Groschup MH, Diederich S. 2020.
Ebola Virus Neutralizing Antibodies in Dogs from Sierra Leone, 2017.
Emerg Infect Dis 26:760-763.

Ferrante F, Giaimo BD, Bartkuhn M, Zimmermann T, Close V, Mertens D, Nist A, Stiewe T, Meier-Soelch J, Kracht M, Just S, Kloble P, Oswald F, Borggrefe T. 2020.
HDAC3 functions as a positive regulator in Notch signal transduction.
Nucleic Acids Res 48:3496-3512.

Felgenhauer U, Schoen A, Gad HH, Hartmann R, Schaubmar AR, Failing K, Drosten C, Weber F. 2020.
Inhibition of SARS-CoV-2 by type I and type III interferons.
J Biol Chem 295:13958-13964.

Elvert M, Sauerhering L, Maisner A. 2020.
Cytokine Induction in Nipah Virus-Infected Primary Human and Porcine Bronchial Epithelial Cells.
J Infect Dis 221:S395-S400.

Blok AJ, Gurnani P, Xenopoulos A, Burroughs L, Duncan J, Urbanowicz RA, Tsoleridis T, Muller-Krauter H, Strecker T, Ball JK, Alexander C, Alexander MR. 2020.
Polymer microarrays rapidly identify competitive adsorbents of virus-like particles.
Biointerphases 15:061005.

Bestle D, Heindl MR, Limburg H, Van Lam van T, Pilgram O, Moulton H, Stein DA, Hardes K, Eickmann M, Dolnik O, Rohde C, Klenk HD, Garten W, Steinmetzer T, Bottcher-Friebertshauser E. 2020.
TMPRSS2 and furin are both essential for proteolytic activation of SARS-CoV-2 in human airway cells.
Life Sci Alliance 3.

Bauersachs D, Potapova E, Renz H, Benes SH, Matricardi PM, Skevaki C. 2020.
Validation of the analytical performance of the NOVEOS System, a system which improves upon the third-generation in vitro allergy testing technology.
Clin Chem Lab Med doi:10.1515/cclm-2020-0535.

Balz K, Trassl L, Hartel V, Nelson PP, Skevaki C. 2020.
Virus-Induced T Cell-Mediated Heterologous Immunity and Vaccine Development.
Front Immunol 11:513.

Bach S, Demper JC, Grunweller A, Becker S, Biedenkopf N, Hartmann RK. 2020.
Regulation of VP30-Dependent Transcription by RNA Sequence and Structure in the Genomic Ebola Virus Promoter.
J Virol doi:10.1128/JVI.02215-20.

Bach S, Demper JC, Biedenkopf N, Becker S, Hartmann RK. 2020.
RNA secondary structure at the transcription start site influences EBOV transcription initiation and replication in a length- and stability-dependent manner.
RNA Biol doi:10.1080/15476286.2020.1818459:1-14.

Bach S, Biedenkopf N, Grunweller A, Becker S, Hartmann RK. 2020.
Hexamer phasing governs transcription initiation in the 3′-leader of Ebola virus.
RNA 26:439-453.

Zapatero-Belinchon FJ, Dietzel E, Dolnik O, Dohner K, Costa R, Hertel B, Veselkova B, Kirui J, Klintworth A, Manns MP, Pohlmann S, Pietschmann T, Krey T, Ciesek S, Gerold G, Sodeik B, Becker S, von Hahn T. 2019.
Characterization of the Filovirus-Resistant Cell Line SH-SY5Y Reveals Redundant Role of Cell Surface Entry Factors.
Viruses 11.

Wuerth JD, Weber F. 2019.
Ferreting out viral pathogenesis.
Nat Microbiol 4:384-385.

Wiwie C, Kuznetsova I, Mostafa A, Rauch A, Haakonsson A, Barrio-Hernandez I, Blagoev B, Mandrup S, Schmidt H, Pleschka S, Rottger R, Baumbach J. 2019.
Time-Resolved Systems Medicine Reveals Viral Infection-Modulating Host Targets.
Syst Med (New Rochelle) 2:1-9.

Weber A, Dam S, Saul VV, Kuznetsova I, Muller C, Fritz-Wolf K, Becker K, Linne U, Gu H, Stokes MP, Pleschka S, Kracht M, Schmitz ML. 2019.
Phosphoproteome Analysis of Cells Infected with Adapted and Nonadapted Influenza A Virus Reveals Novel Pro- and Antiviral Signaling Networks.
J Virol 93.

Weber A, Dam S, Saul VV, Kuznetsova I, Muller C, Fritz-Wolf K, Becker K, Linne U, Gu H, Stokes MP, Pleschka S, Kracht M, Schmitz ML. 2019.
Phosphoproteome Analysis of Cells Infected with Adapted and Nonadapted Influenza A Virus Reveals Novel Pro- and Antiviral Signaling Networks.
J Virol 93.

Viehweger A, Krautwurst S, Lamkiewicz K, Madhugiri R, Ziebuhr J, Holzer M, Marz M. 2019.
Direct RNA nanopore sequencing of full-length coronavirus genomes provides novel insights into structural variants and enables modification analysis.
Genome Res 29:1545-1554.

Tvarogova J, Madhugiri R, Bylapudi G, Ferguson LJ, Karl N, Ziebuhr J. 2019.
Identification and Characterization of a Human Coronavirus 229E Nonstructural Protein 8-Associated RNA 3′-Terminal Adenylyltransferase Activity.
J Virol 93.

Timothy JWS, Hall Y, Akoi-Bore J, Diallo B, Tipton TRW, Bower H, Strecker T, Glynn JR, Carroll MW. 2019.
Early transmission and case fatality of Ebola virus at the index site of the 2013-16 west African Ebola outbreak: a cross-sectional seroprevalence survey.
Lancet Infect Dis 19:429-438.

Tighe RM, Redente EF, Yu YR, Herold S, Sperling AI, Curtis JL, Duggan R, Swaminathan S, Nakano H, Zacharias WJ, Janssen WJ, Freeman CM, Brinkman RR, Singer BD, Jakubzick CV, Misharin AV. 2019.
Improving the Quality and Reproducibility of Flow Cytometry in the Lung. An Official American Thoracic Society Workshop Report.
Am J Respir Cell Mol Biol 61:150-161.

Takamatsu Y, Dolnik O, Noda T, Becker S. 2019.
A live-cell imaging system for visualizing the transport of Marburg virus nucleocapsid-like structures.
Virol J 16:159.

Shrestha A, Carraro G, Nottet N, Vazquez-Armendariz AI, Herold S, Cordero J, Singh I, Wilhelm J, Barreto G, Morty R, El Agha E, Mari B, Chen C, Zhang JS, Chao CM, Bellusci S. 2019.
A critical role for miR-142 in alveolar epithelial lineage formation in mouse lung development.
Cell Mol Life Sci 76:2817-2832.

Shehata MM, Mostafa A, Teubner L, Mahmoud SH, Kandeil A, Elshesheny R, Frantz R, La Pietra L, Pleschka S, Osman A, Kayali G, Chakraborty T, Ali MA, Mraheil MA. 2019.
Bacterial Outer Membrane Vesicles (OMVs)-based Dual Vaccine for Influenza A H1N1 Virus and MERS-CoV.
Vaccines (Basel) 7.

Seibert M, Kruger M, Watson NA, Sen O, Daum JR, Slotman JA, Braun T, Houtsmuller AB, Gorbsky GJ, Jacob R, Kracht M, Higgins JMG, Schmitz ML. 2019.
CDK1-mediated phosphorylation at H2B serine 6 is required for mitotic chromosome segregation.
J Cell Biol 218:1164-1181.

Schmoldt C, Vazquez-Armendariz AI, Shalashova I, Selvakumar B, Bremer CM, Peteranderl C, Wasnick R, Witte B, Gattenlohner S, Fink L, Vadasz I, Morty RE, Pleschka S, Seeger W, Gunther A, Herold S. 2019.
IRE1 Signaling As a Putative Therapeutic Target in Influenza Virus-induced Pneumonia.
Am J Respir Cell Mol Biol 61:537-540.

Scheller N, Herold S, Kellner R, Bertrams W, Jung AL, Janga H, Greulich T, Schulte LN, Vogelmeier CF, Lohmeyer J, Schmeck B. 2019.
Proviral MicroRNAs Detected in Extracellular Vesicles From Bronchoalveolar Lavage Fluid of Patients With Influenza Virus-Induced Acute Respiratory Distress Syndrome.
J Infect Dis 219:540-543.

Saul VV, Seibert M, Kruger M, Jeratsch S, Kracht M, Schmitz ML. 2019.
ULK1/2 Restricts the Formation of Inducible SINT-Speckles, Membraneless Organelles Controlling the Threshold of TBK1 Activation.
iScience 19:527-544.

Salwig I, Spitznagel B, Vazquez-Armendariz AI, Khalooghi K, Guenther S, Herold S, Szibor M, Braun T. 2019.
Bronchioalveolar stem cells are a main source for regeneration of distal lung epithelia in vivo.
EMBO J 38.

Rohde C, Becker S, Krahling V. 2019.
Marburg virus regulates the IRE1/XBP1-dependent unfolded protein response to ensure efficient viral replication.
Emerg Microbes Infect 8:1300-1313.

Ritter O, Schmitz ML. 2019.
Differential intracellular localization and dynamic nucleocytoplasmic shuttling of homeodomain-interacting protein kinase family members.
Biochim Biophys Acta Mol Cell Res 1866:1676-1686.

Ringel M, Heiner A, Behner L, Halwe S, Sauerhering L, Becker N, Dietzel E, Sawatsky B, Kolesnikova L, Maisner A. 2019.
Nipah virus induces two inclusion body populations: Identification of novel inclusions at the plasma membrane.
PLoS Pathog 15:e1007733.

Riedlinger T, Liefke R, Meier-Soelch J, Jurida L, Nist A, Stiewe T, Kracht M, Schmitz ML. 2019.
NF-kappaB p65 dimerization and DNA-binding is important for inflammatory gene expression.
FASEB J 33:4188-4202.

Riedlinger T, Bartkuhn M, Zimmermann T, Hake SB, Nist A, Stiewe T, Kracht M, Schmitz ML. 2019.
Chemotherapeutic Drugs Inhibiting Topoisomerase 1 Activity Impede Cytokine-Induced and NF-kappaB p65-Regulated Gene Expression.
Cancers (Basel) 11.

Rasche A, Lehmann F, Konig A, Goldmann N, Corman VM, Moreira-Soto A, Geipel A, van Riel D, Vakulenko YA, Sander AL, Niekamp H, Kepper R, Schlegel M, Akoua-Koffi C, Souza B, Sahr F, Olayemi A, Schulze V, Petraityte-Burneikiene R, Kazaks A, Lowjaga K, Geyer J, Kuiken T, Drosten C, Lukashev AN, Fichet-Calvet E, Ulrich RG, Glebe D, Drexler JF. 2019.
Highly diversified shrew hepatitis B viruses corroborate ancient origins and divergent infection patterns of mammalian hepadnaviruses.
Proc Natl Acad Sci U S A 116:17007-17012.

Potaczek DP, Unger SD, Zhang N, Taka S, Michel S, Akdag N, Lan F, Helfer M, Hudemann C, Eickmann M, Skevaki C, Megremis S, Sadewasser A, Alashkar Alhamwe B, Alhamdan F, Akdis M, Edwards MR, Johnston SL, Akdis CA, Becker S, Bachert C, Papadopoulos NG, Garn H, Renz H. 2019.
Development and characterization of DNAzyme candidates demonstrating significant efficiency against human rhinoviruses.
J Allergy Clin Immunol 143:1403-1415.

Petrova VN, Sawatsky B, Han AX, Laksono BM, Walz L, Parker E, Pieper K, Anderson CA, de Vries RD, Lanzavecchia A, Kellam P, von Messling V, de Swart RL, Russell CA. 2019.
Incomplete genetic reconstitution of B cell pools contributes to prolonged immunosuppression after measles.
Sci Immunol 4.

Peteranderl C, Kuznetsova I, Schulze J, Hardt M, Lecuona E, Sznajder JI, Vadasz I, Morty RE, Pleschka S, Wolff T, Herold S. 2019.
Influenza A Virus Infection Induces Apical Redistribution of Na(+), K(+)-ATPase in Lung Epithelial Cells In Vitro and In Vivo.
Am J Respir Cell Mol Biol 61:395-398.

Peteranderl C, Kuznetsova I, Schulze J, Hardt M, Lecuona E, Sznajder JI, Vadasz I, Morty RE, Pleschka S, Wolff T, Herold S. 2019.
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To Conquer the Host, Influenza Virus Is Packing It In: Interferon-Antagonistic Strategies beyond NS1.
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Weber-Gerlach M, Weber F. 2016.
Standing on three legs: antiviral activities of RIG-I against influenza viruses.
Curr Opin Immunol 42:71-75.

Tenekeci U, Poppe M, Beuerlein K, Buro C, Muller H, Weiser H, Kettner-Buhrow D, Porada K, Newel D, Xu M, Chen ZJ, Busch J, Schmitz ML, Kracht M. 2016.
K63-Ubiquitylation and TRAF6 Pathways Regulate Mammalian P-Body Formation and mRNA Decapping.
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Influenza virus damages the alveolar barrier by disrupting epithelial cell tight junctions.
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Schmitz ML, Kracht M. 2016.
Cyclin-Dependent Kinases as Coregulators of Inflammatory Gene Expression.
Trends Pharmacol Sci 37:101-113.

Schlereth J, Grunweller A, Biedenkopf N, Becker S, Hartmann RK. 2016.
RNA binding specificity of Ebola virus transcription factor VP30.
RNA Biol 13:783-98.

Sauerhering L, Zickler M, Elvert M, Behner L, Matrosovich T, Erbar S, Matrosovich M, Maisner A. 2016.
Species-specific and individual differences in Nipah virus replication in porcine and human airway epithelial cells.
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Antisense molecules: A new class of drugs.
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Macrophage-epithelial paracrine crosstalk inhibits lung edema clearance during influenza infection.
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Müller C KN, Ziebuhr Z, Pleschka S. 2016.
D, L-lysine aceylsalicylate + glycine Impairs Coronavirus Replication.
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Mostafa A, Abdelwhab el SM, Slanina H, Hussein MA, Kuznetsova I, Schuttler CG, Ziebuhr J, Pleschka S. 2016.
Phylogenetic analysis of human influenza A/H3N2 viruses isolated in 2015 in Germany indicates significant genetic divergence from vaccine strains.
Arch Virol 161:1505-15.

Mengel JP, Lissin A, Biedenkopf N, Schultze T, Mannala GK, Schudt G, Kann G, Wolf T, Eickmann M, Becker S, Cemic F, Hain T. 2016.
Complete Genome Sequence of an Ebola Virus Isolate Imported from Sierra Leone to Germany Determined by Circle Sequencing.
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Li S, Sun Z, Pryce R, Parsy ML, Fehling SK, Schlie K, Siebert CA, Garten W, Bowden TA, Strecker T, Huiskonen JT. 2016.
Acidic pH-Induced Conformations and LAMP1 Binding of the Lassa Virus Glycoprotein Spike.
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Lemmermeyer T, Lamp B, Schneider R, Ziebuhr J, Tekes G, Thiel HJ. 2016.
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Vet Microbiol 184:11-9.

Koehler A, Kolesnikova L, Welzel U, Schudt G, Herwig A, Becker S. 2016.
A Single Amino Acid Change in the Marburg Virus Matrix Protein VP40 Provides a Replicative Advantage in a Species-Specific Manner.
J Virol 90:1444-54.

Koehler A, Kolesnikova L, Becker S. 2016.
An active site mutation increases the polymerase activity of the guinea pig-lethal Marburg virus.
J Gen Virol 97:2494-2500.

Kainulainen M, Lau S, Samuel CE, Hornung V, Weber F. 2016.
NSs Virulence Factor of Rift Valley Fever Virus Engages the F-Box Proteins FBXW11 and beta-TRCP1 To Degrade the Antiviral Protein Kinase PKR.
J Virol 90:6140-7.

Islam MK, Baudin M, Eriksson J, Oberg C, Habjan M, Weber F, Overby AK, Ahlm C, Evander M. 2016.
High-Throughput Screening Using a Whole-Cell Virus Replication Reporter Gene Assay to Identify Inhibitory Compounds against Rift Valley Fever Virus Infection.
J Biomol Screen 21:354-62.

Garn H, Bahn S, Baune BT, Binder EB, Bisgaard H, Chatila TA, Chavakis T, Culmsee C, Dannlowski U, Gay S, Gern J, Haahtela T, Kircher T, Muller-Ladner U, Neurath MF, Preissner KT, Reinhardt C, Rook G, Russell S, Schmeck B, Stappenbeck T, Steinhoff U, van Os J, Weiss S, Zemlin M, Renz H. 2016.
Current concepts in chronic inflammatory diseases: Interactions between microbes, cellular metabolism, and inflammation.
J Allergy Clin Immunol 138:47-56.

Fichet-Calvet E, Olschlager S, Strecker T, Koivogui L, Becker-Ziaja B, Camara AB, Soropogui B, Magassouba N, Gunther S. 2016.
Spatial and temporal evolution of Lassa virus in the natural host population in Upper Guinea.
Sci Rep 6:21977.

Dam S, Kracht M, Pleschka S, Schmitz ML. 2016.
The Influenza A Virus Genotype Determines the Antiviral Function of NF-kappaB.
J Virol 90:7980-90.

Blanck S, Ziebuhr J. 2016.
Proteolytic processing of mesonivirus replicase polyproteins by the viral 3C-like protease.
J Gen Virol 97:1439-1445.

Biedenkopf N, Schlereth J, Grunweller A, Becker S, Hartmann RK. 2016.
RNA Binding of Ebola Virus VP30 Is Essential for Activating Viral Transcription.
J Virol 90:7481-7496.

Biedenkopf N, Lier C, Becker S. 2016.
Dynamic Phosphorylation of VP30 Is Essential for Ebola Virus Life Cycle.
J Virol 90:4914-4925.

Baumann J, Kouassi NM, Foni E, Klenk HD, Matrosovich M. 2016.
H1N1 Swine Influenza Viruses Differ from Avian Precursors by a Higher pH Optimum of Membrane Fusion.
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Alam MI MA, Kanrai P, Müller C, Dzieciolowski J, Lenz E, Kuznetsova I, Schult-Dietrich P, Ziebuhr J, Dietrich U, Pleschka S. 2016.
Verapamil has antiviral activities that target different steps of the influenza virus replication cycle.
J Antivir Antiretrovir 8:121-130.

Wendel I, Rubbenstroth D, Doedt J, Kochs G, Wilhelm J, Staeheli P, Klenk HD, Matrosovich M. 2015.
The avian-origin PB1 gene segment facilitated replication and transmissibility of the H3N2/1968 pandemic influenza virus.
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Wendel I, Matrosovich M, Klenk HD. 2015.
SnapShot: Evolution of human influenza A viruses.
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Fusion activity of African henipavirus F proteins with a naturally occurring start codon directly upstream of the signal peptide.
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Weber M, Sediri H, Felgenhauer U, Binzen I, Banfer S, Jacob R, Brunotte L, Garcia-Sastre A, Schmid-Burgk JL, Schmidt T, Hornung V, Kochs G, Schwemmle M, Klenk HD, Weber F. 2015.
Influenza virus adaptation PB2-627K modulates nucleocapsid inhibition by the pathogen sensor RIG-I.
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Weber F. 2015.
The catcher in the RIG-I.
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Role of Substitutions in the Hemagglutinin in the Emergence of the 1968 Pandemic Influenza Virus.
J Virol 89:12211-6.

Shpacovitch V, Temchura V, Matrosovich M, Hamacher J, Skolnik J, Libuschewski P, Siedhoff D, Weichert F, Marwedel P, Muller H, Uberla K, Hergenroder R, Zybin A. 2015.
Application of surface plasmon resonance imaging technique for the detection of single spherical biological submicrometer particles.
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Schudt G, Dolnik O, Kolesnikova L, Biedenkopf N, Herwig A, Becker S. 2015.
Transport of Ebolavirus Nucleocapsids Is Dependent on Actin Polymerization: Live-Cell Imaging Analysis of Ebolavirus-Infected Cells.
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Saul VV, Niedenthal R, Pich A, Weber F, Schmitz ML. 2015.
SUMO modification of TBK1 at the adaptor-binding C-terminal coiled-coil domain contributes to its antiviral activity.
Biochim Biophys Acta 1853:136-43.

Matrosovich M, Herrler G, Klenk HD. 2015.
Sialic Acid Receptors of Viruses.
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What adaptive changes in hemagglutinin and neuraminidase are necessary for emergence of pandemic influenza virus from its avian precursor?
Biochemistry (Mosc) 80:872-80.

Dietzel E, Kolesnikova L, Sawatsky B, Heiner A, Weis M, Kobinger GP, Becker S, von Messling V, Maisner A. 2015.
Nipah Virus Matrix Protein Influences Fusogenicity and Is Essential for Particle Infectivity and Stability.
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Weis M, Behner L, Hoffmann M, Kruger N, Herrler G, Drosten C, Drexler JF, Dietzel E, Maisner A. 2014.
Characterization of African bat henipavirus GH-M74a glycoproteins.
J Gen Virol 95:539-548.

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Segmented negative-strand RNA viruses and RIG-I: divide (your genome) and rule.
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Weber M, Weber F. 2014.
RIG-I-like receptors and negative-strand RNA viruses: RLRly bird catches some worms.
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Weber M, Weber F. 2014.
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Tackling feline infectious peritonitis via reverse genetics.
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The intricate interplay between RNA viruses and NF-kappaB.
Biochim Biophys Acta 1843:2754-2764.

Olal D, Dick A, Woods VL, Jr., Liu T, Li S, Devignot S, Weber F, Saphire EO, Daumke O. 2014.
Structural insights into RNA encapsidation and helical assembly of the Toscana virus nucleoprotein.
Nucleic Acids Res 42:6025-37.

Madhugiri R, Fricke M, Marz M, Ziebuhr J. 2014.
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Kainulainen M, Habjan M, Hubel P, Busch L, Lau S, Colinge J, Superti-Furga G, Pichlmair A, Weber F. 2014.
Virulence factor NSs of rift valley fever virus recruits the F-box protein FBXO3 to degrade subunit p62 of general transcription factor TFIIH.
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The role of microRNAs in hepatitis C virus RNA replication.
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Characterization of an alphamesonivirus 3C-like protease defines a special group of nidovirus main proteases.
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Bank-Wolf BR, Stallkamp I, Wiese S, Moritz A, Tekes G, Thiel HJ. 2014.
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Niepmann M. 2013.
Hepatitis C virus RNA translation.
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Klemm C, Reguera J, Cusack S, Zielecki F, Kochs G, Weber F. 2013.
Systems to establish bunyavirus genome replication in the absence of transcription.
J Virol 87:8205-12.

Conrad KD, Giering F, Erfurth C, Neumann A, Fehr C, Meister G, Niepmann M. 2013.
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